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Author:

Ruan Xiaogang (Ruan Xiaogang.) | Li Yingxin (Li Yingxin.) | Li Jiangeng (Li Jiangeng.) | Gong Daoxiong (Gong Daoxiong.) | Wang Jinlian (Wang Jinlian.)

Indexed by:

Scopus SCIE

Abstract:

Gene expression profiles of 14 common tumors and their counterpart normal tissues were analyzed with machine learning methods to address the problem of selection of tumor-specific genes and analysis of their differential expressions in tumor tissues. First, a variation of the Relief algorithm, "RFE_Relief algorithm" was proposed to learn the relations between genes and tissue types. Then, a support vector machine was employed to find the gene subset with the best classification performance for distinguishing cancerous tissues and their counterparts. After tissue-specific genes were removed, cross validation experiments were employed to demonstrate the common deregulated expressions of the selected gene in tumor tissues. The results indicate the existence of a specific expression fingerprint of these genes that is shared in different tumor tissues, and the hallmarks of the expression patterns of these genes in cancerous tissues are summarized at the end of this paper.

Keyword:

cancer support vector machine gene expression profile informative gene selection

Author Community:

  • [ 1 ] Beijing Univ Technol, Sch Elect Informat & Control Engn, Beijing 100022, Peoples R China

Reprint Author's Address:

  • [Ruan Xiaogang]Beijing Univ Technol, Sch Elect Informat & Control Engn, Beijing 100022, Peoples R China

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Source :

SCIENCE IN CHINA SERIES C-LIFE SCIENCES

ISSN: 1006-9305

Year: 2006

Issue: 3

Volume: 49

Page: 293-304

JCR Journal Grade:3

Cited Count:

WoS CC Cited Count: 4

SCOPUS Cited Count: 4

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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