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Author:

Liu, Yue (Liu, Yue.) | Li, Xiaoqin (Li, Xiaoqin.) | Xu, Haisong (Xu, Haisong.) | Qiao, Hui (Qiao, Hui.)

Indexed by:

CPCI-S EI Scopus

Abstract:

Fold recognition is an important issue in protein structure research. The Rossmann-fold protein that has typical structure is a common kind of alpha/beta protein. The training set, selected from 22 families, is constituted of 79 Rossmann-fold proteins which have less than 25% sequence identity with each other. The hierarchical clustering method according to RMSD is applied and a profile-HMM based on structure alignment is built for each cluster. Testing on 9505 proteins with less than 95% sequence identity from Astrall.65, the sensitivity, specificity and MCC are 93.9%, 82.1% and 0.876 respectively. The result shows that building profile-HMMs after classification could reach precise fold recognition while a unified one cannot he built due to there are too many members in training set.

Keyword:

Rossmann-fold protein RMSD hierarchical clustering fold recognition profile-HMM

Author Community:

  • [ 1 ] [Liu, Yue]Beijing Univ Technol, Sch Life Sci & Biomed Engn, Beijing, Peoples R China
  • [ 2 ] [Li, Xiaoqin]Beijing Univ Technol, Sch Life Sci & Biomed Engn, Beijing, Peoples R China
  • [ 3 ] [Xu, Haisong]Beijing Univ Technol, Sch Life Sci & Biomed Engn, Beijing, Peoples R China
  • [ 4 ] [Qiao, Hui]Beijing Univ Technol, Sch Life Sci & Biomed Engn, Beijing, Peoples R China

Reprint Author's Address:

  • [Liu, Yue]Beijing Univ Technol, Sch Life Sci & Biomed Engn, Beijing, Peoples R China

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Source :

FBIE: 2008 INTERNATIONAL SEMINAR ON FUTURE BIOMEDICAL INFORMATION ENGINEERING, PROCEEDINGS

Year: 2008

Page: 78-81

Language: English

Cited Count:

WoS CC Cited Count: 0

SCOPUS Cited Count:

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 2

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