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Molecular docking is one of the effective methods for studying the interaction and recognition between protein and RNA. The reasonable design of scoring functions and accurate RNA-binding site identification are critical to the successful prediction of protein-RNA complex structures. In this paper, the research progresses on the two important aspects involved in protein-RNA docking study including scoring function design and RNA-binding site prediction were reviewed. And a comparison for these currently proposed methods was made. Finally, the major difficulties were analyzed in the two aspects and the development direction in the future was discussed. © 2017, Editorial Department of Journal of Beijing University of Technology. All right reserved.
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