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Author:

Su, Ji Guo (Su, Ji Guo.) | Chen, Wei Zu (Chen, Wei Zu.) | Wang, Cun Xin (Wang, Cun Xin.)

Indexed by:

Scopus SCIE PubMed

Abstract:

The impacts of three charged-residue-involved mutations, E46A, R3E, and R3E/L66E, on the thermostability and folding behavior of the cold shock protein from the themophile Bacillus caldolyticus (Bc-Csp) were investigated by using a modified Go-like model, in which the nonspecific electrostatic interactions of charged residues were taken into account. Our simulation results show that the wild-type Bc-Csp and its three mutants are all two-sate folders, which is consistent with the experimental observations. It is found that these three mutations all lead to a decrease of protein thermodynamical stability, and the effect of R3E mutation is the strongest. The lower stability of these three mutants is due to the increase of the enthalpy of the folded state and the entropy of the unfolded state. Using this model, we also studied the folding kinetics and the folding/unfolding pathway of the wild-type Bc-Csp as well as its three mutants and then discussed the effects of electrostatic interactions on the folding kinetics. The results indicate that the substitutions at positions 3 and 46 largely decrease the folding kinetics, whereas the mutation of residue 66 only slightly decreases the folding rate. This result agrees well with the experimental observations. It is also found that these mutations have little effects on the folding transition state and the folding pathway, in which the N-terminal beta sheet folds earlier than the C-terminal region. We also investigated the detailed unfolding pathway and found that it is really the reverse of the folding pathway, providing the validity of our simulation results.

Keyword:

molecular dynamics thermostability folding/unfolding pathway folding kinetics thermophilic protein Go model

Author Community:

  • [ 1 ] [Su, Ji Guo]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Chen, Wei Zu]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Wang, Cun Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Su, Ji Guo]Yanshan Univ, Coll Sci, Qinhuangdao 066004, Peoples R China

Reprint Author's Address:

  • [Wang, Cun Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

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Source :

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

ISSN: 0887-3585

Year: 2010

Issue: 9

Volume: 78

Page: 2157-2169

2 . 9 0 0

JCR@2022

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

JCR Journal Grade:2

Cited Count:

WoS CC Cited Count: 10

SCOPUS Cited Count: 10

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 0

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