• 综合
  • 标题
  • 关键词
  • 摘要
  • 学者
  • 期刊-刊名
  • 期刊-ISSN
  • 会议名称
搜索

作者:

Yan Li-Cheng (Yan Li-Cheng.) | Su Ji-Guo (Su Ji-Guo.) | Chen Wei-Zu (Chen Wei-Zu.) | Wang Cun-Xin (Wang Cun-Xin.)

收录:

Scopus SCIE PKU CSCD

摘要:

The theoretical and experimental studies have showed that the topology of the native structure of protein plays an important role in determining its folding process. The complex network approach was used to analyze the topological characters of the native structure of protein and then explore the relationship between these characters and the experimental folding rates. Several types of network were constructed, including all-amino-acids network, hydrophobic amino acid network, hydrophilic amino acid, hydrophobic-hydrophilic amino acid network and their corresponding long-range interaction network. The statistic characters of the assortativity coefficient and the clustering coefficient were studied. The results indicate that all types of network except for the hydrophobic-hydrophilic one are of the positive assortativity coefficient. Furthermore, there is an obvious linear positive correlation between the assortativity coefficient and the folding rate for the all amino acids network and the hydrophobic amino acid network, which implies that the cooperative interactions of the hydrophobic amino acids are important for proteins rapidly folding into their native states. Moreover, it is found that there is a clear linear negative correlation between the clustering coefficient of the hydrophobic amino acid networks and the experimental folding rates of the corresponding proteins, which indicates that the formation of the triangle construction among the amino acids reduces the folding rates. It is also found that in the long-range interaction networks, the formation of contact pairs linking two distant residues in sequence would slow down the process of protein folding.

关键词:

amino acid network assortativity coefficient clustering coefficient hydrophobic interaction rate of folding

作者机构:

  • [ 1 ] [Yan Li-Cheng]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Su Ji-Guo]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Chen Wei-Zu]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Wang Cun-Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 5 ] [Su Ji-Guo]Yanshan Univ, Coll Sci, Qinhuangdao 066004, Peoples R China

通讯作者信息:

  • [Wang Cun-Xin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

电子邮件地址:

查看成果更多字段

相关关键词:

来源 :

PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS

ISSN: 1000-3282

年份: 2010

期: 7

卷: 37

页码: 762-768

0 . 3 0 0

JCR@2022

ESI学科: BIOLOGY & BIOCHEMISTRY;

JCR分区:4

中科院分区:4

被引次数:

WoS核心集被引频次: 2

SCOPUS被引频次: 3

ESI高被引论文在榜: 0 展开所有

万方被引频次:

中文被引频次:

近30日浏览量: 2

在线人数/总访问数:5901/2941669
地址:北京工业大学图书馆(北京市朝阳区平乐园100号 邮编:100124) 联系我们:010-67392185
版权所有:北京工业大学图书馆 站点建设与维护:北京爱琴海乐之技术有限公司