• 综合
  • 标题
  • 关键词
  • 摘要
  • 学者
  • 期刊-刊名
  • 期刊-ISSN
  • 会议名称
搜索

作者:

Hu Jianping (Hu Jianping.) | Zhang Xiaoyi (Zhang Xiaoyi.) | Tang Dianyong (Tang Dianyong.) | Chang Shan (Chang Shan.)

收录:

Scopus SCIE PKU CSCD

摘要:

The recognitions and interactions of a series of aryl diketoacid (ADK) inhibitors with HIV-1 integrase (IN) were studied via molecular docking method. The results indicate that the inhibitors bind to the pocket (formed by Asp64 similar to Leu68, Thr115 similar to Phe121, Gln148 similar to Lys159 and Mg2+ ion) of IN, and the inhibiting mechanism is similar to that of 5CITEP. Molecular dynamics simulation and MM/PBSA methods were used to calculate the binding free energy between ADK inhibitors and IN. The calculated binding free energy agrees well with experimental data, and the average absolute deviation is 3.6 kJ/mol. It was also found that the formation of the complex was mainly driven by the favorable van der Waals'(VDW) interactions in the system and the favorable non-polar item of the solvent effect. Correlation analysis shows that the binding free energy has obvious linear correlation with the hydrophobic interaction (R=0.61), from which a good model predicting the binding free energy of ADK inhibitors with HIV-1 IN has been obtained through a multiple linear regression method. All the above simulation results provide us with some helpful instruction for the anti-HIV drug design based on the structures of inhibitors.

关键词:

aryl diketoacid binding free energy correlation integrase molecular design

作者机构:

  • [ 1 ] [Hu Jianping]Leshan Teachers Coll, Coll Chem & Life Sci, Leshan 614004, Peoples R China
  • [ 2 ] [Tang Dianyong]Leshan Teachers Coll, Coll Chem & Life Sci, Leshan 614004, Peoples R China
  • [ 3 ] [Zhang Xiaoyi]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Chang Shan]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

通讯作者信息:

  • [Hu Jianping]Leshan Teachers Coll, Coll Chem & Life Sci, Leshan 614004, Peoples R China

电子邮件地址:

查看成果更多字段

相关关键词:

相关文章:

来源 :

ACTA CHIMICA SINICA

ISSN: 0567-7351

年份: 2009

期: 19

卷: 67

页码: 2177-2183

2 . 5 0 0

JCR@2022

ESI学科: CHEMISTRY;

JCR分区:3

中科院分区:1

被引次数:

WoS核心集被引频次: 1

SCOPUS被引频次:

ESI高被引论文在榜: 0 展开所有

万方被引频次:

中文被引频次:

近30日浏览量: 5

在线人数/总访问数:788/2915387
地址:北京工业大学图书馆(北京市朝阳区平乐园100号 邮编:100124) 联系我们:010-67392185
版权所有:北京工业大学图书馆 站点建设与维护:北京爱琴海乐之技术有限公司