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Author:

Li, Qi (Li, Qi.) | Pellegrino, Jenna (Pellegrino, Jenna.) | Lee, D. John (Lee, D. John.) | Tran, Arthur A. (Tran, Arthur A..) | Chaires, Hector A. (Chaires, Hector A..) | Wang, Ruoxi (Wang, Ruoxi.) | Park, Jesslyn E. (Park, Jesslyn E..) | Ji, Kaijie (Ji, Kaijie.) | Chow, David (Chow, David.) | Zhang, Na (Zhang, Na.) | Brilot, Axel F. (Brilot, Axel F..) | Biel, Justin T. (Biel, Justin T..) | van Zundert, Gydo (van Zundert, Gydo.) | Borrelli, Kenneth (Borrelli, Kenneth.) | Shinabarger, Dean (Shinabarger, Dean.) | Wolfe, Cindy (Wolfe, Cindy.) | Murray, Beverly (Murray, Beverly.) | Jacobson, Matthew P. (Jacobson, Matthew P..) | Muhle, Estelle (Muhle, Estelle.) | Chesneau, Olivier (Chesneau, Olivier.) | Fraser, James S. (Fraser, James S..) | Seiple, Ian B. (Seiple, Ian B..)

Indexed by:

Scopus SCIE PubMed

Abstract:

Modular synthesis and structural biology are used to design and characterize group A streptogramin antibiotics, one of which has activity against streptogramin-resistant strains and demonstrates efficacy in a mouse model of bacterial infection. Natural products serve as chemical blueprints for most antibiotics in clinical use. The evolutionary process by which these molecules arise is inherently accompanied by the co-evolution of resistance mechanisms that shorten the clinical lifetime of any given class of antibiotics(1). Virginiamycin acetyltransferase (Vat) enzymes are resistance proteins that provide protection against streptogramins(2), potent antibiotics against Gram-positive bacteria that inhibit the bacterial ribosome(3). Owing to the challenge of selectively modifying the chemically complex, 23-membered macrocyclic scaffold of group A streptogramins, analogues that overcome the resistance conferred by Vat enzymes have not been previously developed(2). Here we report the design, synthesis, and antibacterial evaluation of group A streptogramin antibiotics with extensive structural variability. Using cryo-electron microscopy and forcefield-based refinement, we characterize the binding of eight analogues to the bacterial ribosome at high resolution, revealing binding interactions that extend into the peptidyl tRNA-binding site and towards synergistic binders that occupy the nascent peptide exit tunnel. One of these analogues has excellent activity against several streptogramin-resistant strains ofStaphylococcus aureus, exhibits decreased rates of acetylation in vitro, and is effective at lowering bacterial load in a mouse model of infection. Our results demonstrate that the combination of rational design and modular chemical synthesis can revitalize classes of antibiotics that are limited by naturally arising resistance mechanisms.

Keyword:

Author Community:

  • [ 1 ] [Li, Qi]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 2 ] [Tran, Arthur A.]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 3 ] [Wang, Ruoxi]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 4 ] [Ji, Kaijie]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 5 ] [Chow, David]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 6 ] [Zhang, Na]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 7 ] [Jacobson, Matthew P.]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 8 ] [Seiple, Ian B.]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA
  • [ 9 ] [Pellegrino, Jenna]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 10 ] [Lee, D. John]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 11 ] [Chaires, Hector A.]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 12 ] [Park, Jesslyn E.]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 13 ] [Biel, Justin T.]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 14 ] [Fraser, James S.]Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
  • [ 15 ] [Zhang, Na]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing, Peoples R China
  • [ 16 ] [Brilot, Axel F.]Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94143 USA
  • [ 17 ] [Borrelli, Kenneth]Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94143 USA
  • [ 18 ] [Brilot, Axel F.]Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA USA
  • [ 19 ] [Borrelli, Kenneth]Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA USA
  • [ 20 ] [van Zundert, Gydo]Schrodinger, New York, NY USA
  • [ 21 ] [Shinabarger, Dean]Micromyx, Kalamazoo, MI USA
  • [ 22 ] [Wolfe, Cindy]Micromyx, Kalamazoo, MI USA
  • [ 23 ] [Murray, Beverly]Micromyx, Kalamazoo, MI USA
  • [ 24 ] [Muhle, Estelle]Inst Pasteur, Collect Inst Pasteur CIP, Microbiol Dept, Paris, France
  • [ 25 ] [Chesneau, Olivier]Inst Pasteur, Collect Inst Pasteur CIP, Microbiol Dept, Paris, France

Reprint Author's Address:

  • [Seiple, Ian B.]Univ Calif San Francisco, Cardiovasc Res Inst, Dept Pharmaceut Chem, San Francisco, CA 94143 USA

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Source :

NATURE

ISSN: 0028-0836

Year: 2020

Issue: 7827

Volume: 586

Page: 145-,

6 4 . 8 0 0

JCR@2022

ESI Discipline: Multidisciplinary;

ESI HC Threshold:349

Cited Count:

WoS CC Cited Count: 68

SCOPUS Cited Count: 65

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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