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作者:

Sun, GM (Sun, GM.) (学者:孙光民) | Dong, XY (Dong, XY.) | Xu, GD (Xu, GD.)

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EI Scopus SCIE

摘要:

In this paper, we propose the joint use of discrete wavelet transform (DWT)-based feature extraction and probabilistic neural network (PNN) classifier to classify tissues using gene expression data. In the feature extraction module, gene expression data are firstly transformed into time-scale domain by DWT and then the reconstructed signals by using wavelet transform are reduced to a lower dimensional feature space. In the module of tissue classification, the outputs of the extractor are fed into it PNN classifier, and the class labels are given finally. Some test and comparison experiments have been made to evaluate the performance of the proposed classification scheme, using the features extracted with as well as without wavelet transform processing procedure. Correct rates of 92% and 98.7% in tumour vs. normal classification have been obtained using the proposed scheme on two well-known data sets: a colon cancer data set and 1 human lung carcinomas data set. (c) 2005 Elsevier B.V. All rights reserved.

关键词:

discrete wavelet transform feature extraction gene expression neural network tumor tissue identification

作者机构:

  • [ 1 ] Beijing Univ Technol, Dept Elect Engn, Beijing 100022, Chao Yang Dist, Peoples R China
  • [ 2 ] Peking Univ, Coll Med, Dept Etiol & Carcinogenesis, Beijing 100021, Peoples R China

通讯作者信息:

  • 孙光民

    [Sun, GM]Beijing Univ Technol, Dept Elect Engn, 100 Ping Yuan, Beijing 100022, Chao Yang Dist, Peoples R China

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来源 :

NEUROCOMPUTING

ISSN: 0925-2312

年份: 2006

期: 4-6

卷: 69

页码: 387-402

6 . 0 0 0

JCR@2022

ESI学科: COMPUTER SCIENCE;

JCR分区:3

被引次数:

WoS核心集被引频次: 31

SCOPUS被引频次: 44

ESI高被引论文在榜: 0 展开所有

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