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Author:

Sun, GM (Sun, GM.) (Scholars:孙光民) | Dong, XY (Dong, XY.) | Xu, GD (Xu, GD.)

Indexed by:

EI Scopus SCIE

Abstract:

In this paper, we propose the joint use of discrete wavelet transform (DWT)-based feature extraction and probabilistic neural network (PNN) classifier to classify tissues using gene expression data. In the feature extraction module, gene expression data are firstly transformed into time-scale domain by DWT and then the reconstructed signals by using wavelet transform are reduced to a lower dimensional feature space. In the module of tissue classification, the outputs of the extractor are fed into it PNN classifier, and the class labels are given finally. Some test and comparison experiments have been made to evaluate the performance of the proposed classification scheme, using the features extracted with as well as without wavelet transform processing procedure. Correct rates of 92% and 98.7% in tumour vs. normal classification have been obtained using the proposed scheme on two well-known data sets: a colon cancer data set and 1 human lung carcinomas data set. (c) 2005 Elsevier B.V. All rights reserved.

Keyword:

tumor tissue identification feature extraction gene expression neural network discrete wavelet transform

Author Community:

  • [ 1 ] Beijing Univ Technol, Dept Elect Engn, Beijing 100022, Chao Yang Dist, Peoples R China
  • [ 2 ] Peking Univ, Coll Med, Dept Etiol & Carcinogenesis, Beijing 100021, Peoples R China

Reprint Author's Address:

  • 孙光民

    [Sun, GM]Beijing Univ Technol, Dept Elect Engn, 100 Ping Yuan, Beijing 100022, Chao Yang Dist, Peoples R China

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Source :

NEUROCOMPUTING

ISSN: 0925-2312

Year: 2006

Issue: 4-6

Volume: 69

Page: 387-402

6 . 0 0 0

JCR@2022

ESI Discipline: COMPUTER SCIENCE;

JCR Journal Grade:3

Cited Count:

WoS CC Cited Count: 31

SCOPUS Cited Count: 44

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 2

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