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作者:

Lu, BZ (Lu, BZ.) | Wang, BH (Wang, BH.) | Chen, WZ (Chen, WZ.) | Wang, CX (Wang, CX.)

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摘要:

An effective and fast minimization approach is proposed for the prediction of protein folding, in which the 'relative entropy' is used as a minimization function and the off- lattice model is used. In this approach, we only use the information of distances between the consecutive C-alpha atoms along the peptide chain and a generalized form of the contact potential for 20 types of amino acids. Tests of the algorithm are performed on the real proteins. The root mean square deviations of the structures of eight folded target proteins versus the native structures are in a reasonable range. In principle, this method is an improvement on the energy minimization approach.

关键词:

minimization off-lattice model protein folding prediction relative entropy

作者机构:

  • [ 1 ] Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100022, Peoples R China
  • [ 2 ] Univ Sci & Technol China, Dept Astron & Appl Phys, Hefei 230026, Peoples R China
  • [ 3 ] Acad Sinica, Inst Biophys, Beijing 100101, Peoples R China

通讯作者信息:

  • [Wang, CX]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100022, Peoples R China

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来源 :

PROTEIN ENGINEERING

ISSN: 0269-2139

年份: 2003

期: 9

卷: 16

页码: 659-663

JCR分区:2

被引次数:

WoS核心集被引频次: 9

SCOPUS被引频次: 8

ESI高被引论文在榜: 0 展开所有

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