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摘要:
Fold recognition is an important issue in protein structure research. The Rossmann-fold protein that has typical structure is a common kind of alpha/beta protein. The training set, selected from 22 families, is constituted of 79 Rossmann-fold proteins which have less than 25% sequence identity with each other. The hierarchical clustering method according to RMSD is applied and a profile-HMM based on structure alignment is built for each cluster. Testing on 9505 proteins with less than 95% sequence identity from Astrall.65, the sensitivity, specificity and MCC are 93.9%, 82.1% and 0.876 respectively. The result shows that building profile-HMMs after classification could reach precise fold recognition while a unified one cannot he built due to there are too many members in training set.
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来源 :
FBIE: 2008 INTERNATIONAL SEMINAR ON FUTURE BIOMEDICAL INFORMATION ENGINEERING, PROCEEDINGS
年份: 2008
页码: 78-81
语种: 英文
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