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Abstract:
An approach to protein design is proposed based on the relative entropy and a reduced amino acid alphabet. In this approach, the relative entropy is used as a minimization object function. The method has been tested on a real protein's off-lattice model successfully, and the results are similar to those obtained from other design studies. It can be applied as a uniform frame for both folding and inverse folding of protein. An iterative calculation method of the ensemble average of the contact strength is proposed at the same time.
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Physical review. E, Statistical, nonlinear, and soft matter physics
ISSN: 1539-3755
Year: 2006
Issue: 6 Pt 1
Volume: 73
Page: 061903
ESI Discipline: PHYSICS;
JCR Journal Grade:1
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SCOPUS Cited Count:
ESI Highly Cited Papers on the List: 0 Unfold All
WanFang Cited Count:
Chinese Cited Count:
30 Days PV: 1
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