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作者:

Xiao, Chi (Xiao, Chi.) | Chen, Xi (Chen, Xi.) | Xie, Qiwei (Xie, Qiwei.) (学者:谢启伟) | Li, Guoqing (Li, Guoqing.) | Xiao, Hao (Xiao, Hao.) | Song, Jingdong (Song, Jingdong.) | Han, Hua (Han, Hua.)

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EI SCIE PubMed

摘要:

Background and Objective: Virus identification in electron microscopy (EM) images is considered as one of the front-line method in pathogen diagnosis and re-emerging infectious agents. However, the existing methods either focused on the detection of a single virus or required large amounts of manual labeling work to segment virus. In this work, we focus on the task of virus classification and propose an effective and simple method to identify different viruses. Methods: We put forward a residual mixed attention network (RMAN) for virus classification. The proposed network uses channel attention, bottom-up and top-down attention, and incorporates a residual architecture in an end-to-end training manner, which is suitable for dealing with EM virus images and reducing the burden of manual annotation. Results: We validate the proposed network through extensive experiments on a transmission electron microscopy virus image dataset. The top-1 error rate of our RMAN on 12 virus classes is 4.285%, which surpasses that of state-of-the-art networks and even human experts. In addition, the ablation study and the visualization of class activation mapping (CAM) further demonstrate the effectiveness of our method. Conclusions: The proposed automated method contributes to the development of medical virology, which provides virologists with a high-accuracy approach to recognize viruses as well as assist in the diagnosis of viruses. © 2020 Elsevier B.V.

关键词:

Computer viruses Diagnosis High resolution transmission electron microscopy Viruses

作者机构:

  • [ 1 ] [Xiao, Chi]School of Biomedical Engineering, Hainan University, Haikou, China
  • [ 2 ] [Xiao, Chi]National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China
  • [ 3 ] [Chen, Xi]National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China
  • [ 4 ] [Xie, Qiwei]National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China
  • [ 5 ] [Xie, Qiwei]Data Mining Lab, Beijing University of Technology, Beijing, China
  • [ 6 ] [Li, Guoqing]National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China
  • [ 7 ] [Xiao, Hao]State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
  • [ 8 ] [Xiao, Hao]College of Physics and Information Science, Key Laboratory of Low-dimensional Quantum Structures, And Quantum Control of the Ministry of Education, Synergetic Innovation Center for Quantum Effects and Applications, Hunan Normal University, Changsha, China
  • [ 9 ] [Song, Jingdong]State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
  • [ 10 ] [Song, Jingdong]Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
  • [ 11 ] [Han, Hua]National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences, Beijing, China
  • [ 12 ] [Han, Hua]Chinese Academy of Sciences Center for Excellence in Brain Science and Intelligence Technology, Shanghai, China
  • [ 13 ] [Han, Hua]School of Future Technology, University of Chinese Academy of Sciences, Beijing, China

通讯作者信息:

  • [song, jingdong]collaborative innovation center for diagnosis and treatment of infectious diseases, hangzhou, china;;[song, jingdong]state key laboratory of infectious disease prevention and control, national institute for viral disease control and prevention, chinese center for disease control and prevention, beijing, china

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来源 :

Computer Methods and Programs in Biomedicine

ISSN: 0169-2607

年份: 2021

卷: 198

6 . 1 0 0

JCR@2022

ESI学科: COMPUTER SCIENCE;

ESI高被引阀值:11

被引次数:

WoS核心集被引频次: 0

SCOPUS被引频次: 12

ESI高被引论文在榜: 0 展开所有

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