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Author:

Tian, Lei (Tian, Lei.) | Zhu, Keli (Zhu, Keli.) | Chen, Yuanyuan (Chen, Yuanyuan.) | Zheng, Xiaowei (Zheng, Xiaowei.) | Zhang, Heng (Zhang, Heng.) | Geng, Zhi (Geng, Zhi.) | Li, Wenqian (Li, Wenqian.) | Ding, Niannian (Ding, Niannian.) | Chen, Jingyu (Chen, Jingyu.) | Dong, Yuhui (Dong, Yuhui.) | Cao, Peng (Cao, Peng.) | Gong, Yong (Gong, Yong.) | Zhang, Zhenfeng (Zhang, Zhenfeng.)

Indexed by:

Scopus SCIE

Abstract:

The lysine (K) tRNA synthetase C-terminal (KTSC) domain containing proteins are widely spread in Bacteria, Archaea and Viruses, but the function of this short domain is unclear. The occurrence of the fusion of KTSC domain to a catalytic domain or domains related to DNA or RNA metabolisms suggests its potential role in DNA or RNA binding. Here, we report the characterization of Mvu8s from Methanolobus vulcani, which consists of a single KTSC domain. Mvu8s binds specifically to ssDNA with an affinity approximately 40-and 10-fold higher than those for dsDNA and ssRNA in vitro, respectively. It shows a slight preference to the G-rich DNA sequence but barely binds the A-stretch. Crystal structure of Mvu8s shows that it forms a homo-tetramer, with each monomer composed of a four-strand antiparallel 13-sheet and a helix-turn-helix in the order of 131-132-133-alpha 1-alpha 2-134. Four basic residues (R3, R7, K54 and K58) were found to serve important roles in ssDNA-binding. And, the spiral arrangement of the DNA interfaces in Mvu8s homo-tetramer presumably results in ssDNA wrapping. Our results not only offer clues of the functions of the KTSC domain containing proteins but also expand our knowledge on the non-oligonucleotide-binding (OB) fold single-stranded DNA-binding proteins in Archaea.

Keyword:

KTSC domain containing protein Single-stranded DNA-binding protein Archaea

Author Community:

  • [ 1 ] [Tian, Lei]Chinese Peoples Liberat Army Gen Hosp, Dept Gen Surg & Inst Gen Surg, Med Ctr 1, Beijing 100853, Peoples R China
  • [ 2 ] [Zhu, Keli]Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, 1 West Beichen Rd, Beijing 100101, Peoples R China
  • [ 3 ] [Zheng, Xiaowei]Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, 1 West Beichen Rd, Beijing 100101, Peoples R China
  • [ 4 ] [Ding, Niannian]Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, 1 West Beichen Rd, Beijing 100101, Peoples R China
  • [ 5 ] [Zhang, Zhenfeng]Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, 1 West Beichen Rd, Beijing 100101, Peoples R China
  • [ 6 ] [Zhu, Keli]Chinese Acad Sci, Inst High Energy Phys, Ctr Multidisciplinary Res, 19B YuquanLu, Beijing 100049, Peoples R China
  • [ 7 ] [Zhang, Heng]Chinese Acad Sci, Inst High Energy Phys, Ctr Multidisciplinary Res, 19B YuquanLu, Beijing 100049, Peoples R China
  • [ 8 ] [Geng, Zhi]Chinese Acad Sci, Inst High Energy Phys, Ctr Multidisciplinary Res, 19B YuquanLu, Beijing 100049, Peoples R China
  • [ 9 ] [Dong, Yuhui]Chinese Acad Sci, Inst High Energy Phys, Ctr Multidisciplinary Res, 19B YuquanLu, Beijing 100049, Peoples R China
  • [ 10 ] [Gong, Yong]Chinese Acad Sci, Inst High Energy Phys, Ctr Multidisciplinary Res, 19B YuquanLu, Beijing 100049, Peoples R China
  • [ 11 ] [Zhu, Keli]Anhui Univ, Inst Phys Sci & Informat Technol, Hefei, Peoples R China
  • [ 12 ] [Chen, Yuanyuan]Chinese Acad Sci, Inst Biophys, Res Platform Prot Sci, 15 Datun Rd, Beijing 100101, Peoples R China
  • [ 13 ] [Li, Wenqian]China Agr Univ, Coll Food Sci & Nut Engn, Key Lab Viticulture & Enol, Minist Agr, Beijing 100083, Peoples R China
  • [ 14 ] [Chen, Jingyu]China Agr Univ, Coll Food Sci & Nut Engn, Key Lab Viticulture & Enol, Minist Agr, Beijing 100083, Peoples R China
  • [ 15 ] [Cao, Peng]Beijing Univ Technol, Fac Environm & Life, 100 Pingleyuan, Beijing 100124, Peoples R China

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Source :

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

ISSN: 0141-8130

Year: 2022

Volume: 216

Page: 618-628

8 . 2

JCR@2022

8 . 2 0 0

JCR@2022

ESI Discipline: BIOLOGY & BIOCHEMISTRY;

ESI HC Threshold:43

JCR Journal Grade:1

CAS Journal Grade:1

Cited Count:

WoS CC Cited Count: 1

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 2

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