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作者:

Wang, Xuedong (Wang, Xuedong.) | Shang, Wenhui (Shang, Wenhui.) | Li, Xiaoqin (Li, Xiaoqin.) | Chang, Yu (Chang, Yu.) (学者:常宇)

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摘要:

In order to identify the signature genes of tumorigenesis, the pattern-recognition method was used to analyze the gene methylation (ME) data which included only normal and cancer samples and was collected from the TCGA (The Cancer Genome Atlas) database. Here, we analyzed the DNA methylation profiles of the six types of cancer and the ME signature genes for each cancer were selected by means of a combination of correlation, students t-test and Elastic Net. Modeling by support vector machine, the accuracy of ME signature genes can be as high as 98 % for training set and as high as 97 % for the independent test set, the recognition accuracy of stage I is more than 97 % for training set and more than 98 % for test set. Then, the common signature genes and common pathways emerging in multiple cancers were obtained. A functional analysis of these signature genes indicates that the identified signatures have direct relationship with tumorigenesis and is very important for understanding the pathogenesis of cancer and the early therapy.

关键词:

Bioinformatics Cancer genomics Cancer occurrence Feature selection TCGA

作者机构:

  • [ 1 ] [Wang, Xuedong]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 2 ] [Shang, Wenhui]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 3 ] [Li, Xiaoqin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China
  • [ 4 ] [Chang, Yu]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

通讯作者信息:

  • [Li, Xiaoqin]Beijing Univ Technol, Coll Life Sci & Bioengn, Beijing 100124, Peoples R China

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来源 :

COMPUTATIONAL BIOLOGY AND CHEMISTRY

ISSN: 1476-9271

年份: 2020

卷: 85

3 . 1 0 0

JCR@2022

ESI学科: COMPUTER SCIENCE;

ESI高被引阀值:34

JCR分区:2

被引次数:

WoS核心集被引频次: 2

SCOPUS被引频次: 1

ESI高被引论文在榜: 0 展开所有

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