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作者:

Wang, Qianqian (Wang, Qianqian.) | Fan, Tengjiao (Fan, Tengjiao.) | Jia, Runqing (Jia, Runqing.) | Zhang, Na (Zhang, Na.) | Zhao, Lijiao (Zhao, Lijiao.) | Zhong, Rugang (Zhong, Rugang.) | Sun, Guohui (Sun, Guohui.)

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EI Scopus SCIE

摘要:

Corona Virus Disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARSCoV-2), poses a serious threat to human health and life safety. How to effectively prevent and treat COVID-19 is crucial. In this study, we used the inhibitors of nonstructural protein Nsp14 of SARS-CoV-2 to perform the quantitative structure activity relationship (QSAR) modelling for the first time. Based on different dataset division strategies, we selected partial least square (PLS) and multiple linear regression (MLR) methods to develop easily interpretable and reproducible QSAR models with 2D molecular descriptors. All models complied with the strict QSAR validation principles of OECD and internationally recognized validation metrics. The best model contained two molecular descriptors with the following statistical parameters: R2 = 0.7796, Q2LOO= 0.7373, R2test = 0.8539 and CCCtest = 0.9073. Obviously, the model exhibited good prediction performance and can be used for quickly predicting the inhibitory activity of unknown compounds against Nsp14. Mechanistic interpretation identified the detailed relationship between molecular structure information and inhibitory activity. The best QSAR model was used to predict the inhibitory activity of 263 true external compounds without experimental values against Nsp14, and the prediction reliability was analyzed and discussed. Molecular docking and ADMET analyses were conducted for compounds with higher similarity to the modelling compounds. Finally, two compounds were identified as potential candidate drugs of targeting Nsp14. The current work lays a solid theoretical foundation for the discovery of inhibitors targeting Nsp14, and has an important reference significance for the development of anti-COVID-19 drugs.

关键词:

SARS-CoV-2 ADMET QSAR Nsp14 inhibitor Docking COVID-19

作者机构:

  • [ 1 ] [Wang, Qianqian]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 2 ] [Fan, Tengjiao]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 3 ] [Zhang, Na]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 4 ] [Zhao, Lijiao]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 5 ] [Zhong, Rugang]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 6 ] [Sun, Guohui]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China
  • [ 7 ] [Fan, Tengjiao]Beijing Pharmaceut Univ Staff & Workers, Dept Med Technol, Beijing 100079, Peoples R China
  • [ 8 ] [Jia, Runqing]Beijing Univ Technol, Fac Environm & Life, Dept Biol, Beijing 100124, Peoples R China

通讯作者信息:

  • [Sun, Guohui]Beijing Univ Technol, Fac Environm & Life, Beijing Key Lab Environm & Viral Oncol, Beijing 100124, Peoples R China

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来源 :

ARABIAN JOURNAL OF CHEMISTRY

ISSN: 1878-5352

年份: 2024

期: 3

卷: 17

6 . 0 0 0

JCR@2022

被引次数:

WoS核心集被引频次: 3

SCOPUS被引频次: 2

ESI高被引论文在榜: 0 展开所有

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中文被引频次:

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