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作者:

Li, Jianqiang (Li, Jianqiang.) (学者:李建强) | Wang, Zhirui (Wang, Zhirui.) | Qiu, Weiliang (Qiu, Weiliang.) | Yang, Ji-Jiang (Yang, Ji-Jiang.) | Wang, Qing (Wang, Qing.) | Chen, Shi (Chen, Shi.) | Pan, Hui (Pan, Hui.)

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摘要:

Alcohol (EtOH) dosage and exposure time can affect gene expression. However, whether there exists synergistic effect is unknown. Here, we analyzed the hDPSC gene microarray dataset GSE57255 downloaded from Gene Expression Omnibus and found that the interaction between EtOH dosage and exposure time on gene expression are statistically significant for two probes: 201917_s_at near gene SLC25A36 and 217649_at near gene ZFAND5. GeneMania showed that SLC25A36 and ZFAND5 were related to 20 genes, three of which had alcohol-related functions. WebGestalt revealed that the 22 genes were enriched in 10 KEGG pathways, four of which are related to alcoholic diseases. We explored the possible nonlinear interaction effect and got 172 gene probes with significant p-values. However, no significantly enriched pathways based on the 172 probes were detected. Our analyses indicated a possible molecular mechanism that could help explain why alcohol consumption has both deleterious and beneficial effects on human health.

关键词:

Alcohol consumption DPSC FDR KEGG Synergistic effect Two-way factorial design

作者机构:

  • [ 1 ] [Li, Jianqiang]Beijing Univ Technol, Sch Software Engn, Beijing, Peoples R China
  • [ 2 ] [Wang, Zhirui]Beijing Univ Technol, Sch Software Engn, Beijing, Peoples R China
  • [ 3 ] [Qiu, Weiliang]Harvard Med Sch, Brigham & Womens Hosp, Channing Div Network Med, Boston, MA 02115 USA
  • [ 4 ] [Yang, Ji-Jiang]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China
  • [ 5 ] [Wang, Qing]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China
  • [ 6 ] [Chen, Shi]Peking Union Med Coll Hosp, Dept Endocrinol, Beijing, Peoples R China
  • [ 7 ] [Pan, Hui]Peking Union Med Coll Hosp, Dept Endocrinol, Beijing, Peoples R China

通讯作者信息:

  • [Yang, Ji-Jiang]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China

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来源 :

GENOMICS

ISSN: 0888-7543

年份: 2019

期: 3

卷: 111

页码: 500-507

4 . 4 0 0

JCR@2022

ESI学科: MOLECULAR BIOLOGY & GENETICS;

ESI高被引阀值:94

JCR分区:1

被引次数:

WoS核心集被引频次: 2

SCOPUS被引频次: 1

ESI高被引论文在榜: 0 展开所有

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