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Author:

Li, Jianqiang (Li, Jianqiang.) (Scholars:李建强) | Wang, Zhirui (Wang, Zhirui.) | Qiu, Weiliang (Qiu, Weiliang.) | Yang, Ji-Jiang (Yang, Ji-Jiang.) | Wang, Qing (Wang, Qing.) | Chen, Shi (Chen, Shi.) | Pan, Hui (Pan, Hui.)

Indexed by:

Scopus SCIE PubMed

Abstract:

Alcohol (EtOH) dosage and exposure time can affect gene expression. However, whether there exists synergistic effect is unknown. Here, we analyzed the hDPSC gene microarray dataset GSE57255 downloaded from Gene Expression Omnibus and found that the interaction between EtOH dosage and exposure time on gene expression are statistically significant for two probes: 201917_s_at near gene SLC25A36 and 217649_at near gene ZFAND5. GeneMania showed that SLC25A36 and ZFAND5 were related to 20 genes, three of which had alcohol-related functions. WebGestalt revealed that the 22 genes were enriched in 10 KEGG pathways, four of which are related to alcoholic diseases. We explored the possible nonlinear interaction effect and got 172 gene probes with significant p-values. However, no significantly enriched pathways based on the 172 probes were detected. Our analyses indicated a possible molecular mechanism that could help explain why alcohol consumption has both deleterious and beneficial effects on human health.

Keyword:

Alcohol consumption Two-way factorial design Synergistic effect DPSC KEGG FDR

Author Community:

  • [ 1 ] [Li, Jianqiang]Beijing Univ Technol, Sch Software Engn, Beijing, Peoples R China
  • [ 2 ] [Wang, Zhirui]Beijing Univ Technol, Sch Software Engn, Beijing, Peoples R China
  • [ 3 ] [Qiu, Weiliang]Harvard Med Sch, Brigham & Womens Hosp, Channing Div Network Med, Boston, MA 02115 USA
  • [ 4 ] [Yang, Ji-Jiang]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China
  • [ 5 ] [Wang, Qing]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China
  • [ 6 ] [Chen, Shi]Peking Union Med Coll Hosp, Dept Endocrinol, Beijing, Peoples R China
  • [ 7 ] [Pan, Hui]Peking Union Med Coll Hosp, Dept Endocrinol, Beijing, Peoples R China

Reprint Author's Address:

  • [Yang, Ji-Jiang]Tsinghua Univ, Tsinghua Natl Lab Informat Sci & Technol, Beijing, Peoples R China

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Source :

GENOMICS

ISSN: 0888-7543

Year: 2019

Issue: 3

Volume: 111

Page: 500-507

4 . 4 0 0

JCR@2022

ESI Discipline: MOLECULAR BIOLOGY & GENETICS;

ESI HC Threshold:259

JCR Journal Grade:1

Cited Count:

WoS CC Cited Count: 2

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 1

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