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摘要:
In this work a novel method was proposed to predict the relative solvent accessibilities of residues from protein primary sequences. This method was based on support vector regression (SVR) and used the local information of the particular residue for prediction as input. Three data sets, RS-126, Manesh-215 and CB-513, were collected and used to evaluate prediction performance. With 3-fold cross validation test, the average of mean absolute error (MAE) and correlation coefficient (CC) for different data set were consistently better than a previous method called RVP-Net which was based on a multilayer feed-forward neural network. In addition, we used multiple sequence alignment as input information and obtained a prediction result of 16.8% for MAE and 0.562 for CC, which was superior to that obtained with single sequence input. The results demonstrate the efficiency of this method and that the support vector regression is a useful tool for proteomics prediction analysis.
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来源 :
Chinese Journal of Biomedical Engineering
ISSN: 0258-8021
年份: 2007
期: 1
卷: 26
页码: 1-5